Protocols

You will find here sections on some of the common protocols used in our lab in addition to talks and demonstrations of some bioinformatics methods.

• Snapshot genotyping: protocols on primer preparation, PCR and purification. (PDF 20 kB)
• How to generate a SNP map using a simple PERL overlapping program. (PDF 144 kB)
• Protocol for sequencing reaction clean-up (X-terminator method).(PDF 343 kB)
• Protocol: using GmailFS to back up your data. (PDF 148 kB)

- GmailFS program (ZIP 147 kB)

- Download a video of what to do (AVI 74.23 MB)

Bioinformatics educational talks

(1) Bioinformatics techniques COD+EK Nov07.ppt (nov '07) (PPT 363 kB)

- DEMO: get_HapMap_SNPs

- DEMO: get_HM_SNPs_vs_HaploView

- DEMO: ld_expander

- DEMO: stata_on_WGA

- DEMO: tk_notebook

- DEMO: tk_notebook_searching

- DEMO: vim - command line text editing

(2) STATA_BC_PLINK.RJLA.NOV2007.ppt (nov '07) (PPT 3.77 MB)

- talk and work-files.zip (ZIP 4.34 MB)

Statistics educational talks

Introduction to Statistics 1.COD.ppt (Oct '07) (PPT 584 kB)

Introduction to Statistics 2.COD.ppt (Oct '07) (PPT 384 kB)

Introduction to Statistics 3.COD.ppt (Oct '07) (PPT 891 kB)

Introduction to Statistics 4.COD.ppt (Oct '07) (PPT 776 kB)